{
  "_id": "6a1edc28b401979e7340fc47",
  "Package": "hyperoverlap",
  "Title": "Overlap Detection in n-Dimensional Space",
  "Version": "1.1.2",
  "Description": "Uses support vector machines to identify a perfectly\nseparating hyperplane (linear or curvilinear) between two\nentities in high-dimensional space. If this plane exists, the\nentities do not overlap. Applications include overlap detection\nin morphological, resource or environmental dimensions. More\ndetails can be found in: Brown et al. (2020)\n<doi:10.1111/2041-210X.13363> .",
  "Authors@R": "c(person(\"Matilda\", \"Brown\", email = \"m.brown2@kew.org\", role = c(\"aut\", \"cre\"), comment= c( ORCID = \"0000-0003-2536-8365\")), person(\"Greg\", \"Jordan\", role=\"aut\"))",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.2",
  "Additional_repositories": "https://dmurdoch.github.io/drat",
  "Config/pak/sysreqs": "cmake libfreetype6-dev libglu1-mesa-dev make\ntexlive libicu-dev libpng-dev libuv1-dev libgl1-mesa-dev\nzlib1g-dev",
  "Repository": "https://matildabrown.r-universe.dev",
  "Date/Publication": "2025-09-22 16:34:46 UTC",
  "RemoteUrl": "https://github.com/matildabrown/hyperoverlap",
  "RemoteRef": "HEAD",
  "RemoteSha": "4969bc1e594343ae26445274847e6048f099943e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-20 08:37:30 UTC",
    "User": "root"
  },
  "Author": "Matilda Brown [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-2536-8365>),\nGreg Jordan [aut]",
  "Maintainer": "Matilda Brown <m.brown2@kew.org>",
  "MD5sum": "8d8ce393d7bcadeddc8d2c2c8b0d61e7",
  "_user": "matildabrown",
  "_type": "src",
  "_file": "hyperoverlap_1.1.2.tar.gz",
  "_fileid": "1ae1ad10637d2615522139f606b4dbfa0a430c413812d214258d5db0bc7e46b2",
  "_filesize": 102762,
  "_sha256": "1ae1ad10637d2615522139f606b4dbfa0a430c413812d214258d5db0bc7e46b2",
  "_created": "2026-05-20T08:37:30.000Z",
  "_published": "2026-06-02T13:35:35.999Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79083043459,
      "time": 193,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7105239007"
    },
    {
      "job": 79083044266,
      "time": 193,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105238801"
    },
    {
      "job": 79083044422,
      "time": 157,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7105217008"
    },
    {
      "job": 79083043463,
      "time": 168,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105220258"
    },
    {
      "job": 79083043043,
      "time": 282,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7105171599"
    },
    {
      "job": 79083042641,
      "time": 166,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7359211261"
    },
    {
      "job": 79083044845,
      "time": 99,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7105206867"
    },
    {
      "job": 79083044620,
      "time": 92,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7105204116"
    },
    {
      "job": 79083043482,
      "time": 108,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105210182"
    }
  ],
  "_buildurl": "https://github.com/r-universe/matildabrown/actions/runs/26151065850",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/matildabrown/hyperoverlap",
  "_commit": {
    "id": "4969bc1e594343ae26445274847e6048f099943e",
    "author": "Matilda Brown <M.Brown2@kew.org>",
    "committer": "Matilda Brown <M.Brown2@kew.org>",
    "message": "update maintainer email and add gh to buildignore\n",
    "time": 1758558886
  },
  "_maintainer": {
    "name": "Matilda Brown",
    "email": "m.brown2@kew.org",
    "login": "matildabrown",
    "orcid": "0000-0003-2536-8365",
    "description": "",
    "uuid": 47408205
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "e1071",
      "role": "Imports"
    },
    {
      "package": "matlib",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "rgl",
      "role": "Imports"
    },
    {
      "package": "misc3d",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "plotrix",
      "role": "Suggests"
    },
    {
      "package": "rlang",
      "role": "Suggests"
    },
    {
      "package": "webshot2",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    }
  ],
  "_owner": "matildabrown",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 1
    },
    {
      "week": "2025-39",
      "n": 4
    }
  ],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "matildabrown",
      "count": 50,
      "uuid": 47408205
    },
    {
      "user": "josephwb",
      "count": 3,
      "uuid": 808499
    }
  ],
  "_userbio": {
    "uuid": 47408205,
    "type": "user",
    "name": "matildabrown"
  },
  "_downloads": {
    "count": 217,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/hyperoverlap"
  },
  "_devurl": "https://github.com/matildabrown/hyperoverlap",
  "_searchresults": 8,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/hyperoverlap.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/matildabrown/hyperoverlap",
  "_realowner": "matildabrown",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2020-09-04"
    },
    {
      "version": "1.1.1",
      "date": "2021-08-10"
    },
    {
      "version": "1.1.3",
      "date": "2025-09-23"
    },
    {
      "version": "1.1.4",
      "date": "2026-01-21"
    }
  ],
  "_exports": [
    "hyperoverlap_detect",
    "hyperoverlap_lda",
    "hyperoverlap_pairs_plot",
    "hyperoverlap_plot",
    "hyperoverlap_set"
  ],
  "_help": [
    {
      "page": "hyperoverlap_detect",
      "title": "Overlap detection in n-dimensional space using support vector machines (SVMs)",
      "topics": [
        "hyperoverlap_detect"
      ]
    },
    {
      "page": "hyperoverlap_lda",
      "title": "Hyperoverlap visualisation using linear discriminant analysis (LDA)",
      "topics": [
        "hyperoverlap_lda"
      ]
    },
    {
      "page": "hyperoverlap_pairs_plot",
      "title": "Overlap heatmap plotting for analysis of multiple entities",
      "topics": [
        "hyperoverlap_pairs_plot"
      ]
    },
    {
      "page": "hyperoverlap_plot",
      "title": "Overlap plotting for low-dimensional spaces",
      "topics": [
        "hyperoverlap_plot"
      ]
    },
    {
      "page": "hyperoverlap_set",
      "title": "Pairwise overlap detection in n-dimensional space of multiple entities using support vector machines (SVMs)",
      "topics": [
        "hyperoverlap_set"
      ]
    },
    {
      "page": "hyperoverlap-class",
      "title": "Storage class for the description of hyperoverlaps",
      "topics": [
        "hyperoverlap-class"
      ]
    }
  ],
  "_readme": "https://github.com/matildabrown/hyperoverlap/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "backports",
    "base64enc",
    "boot",
    "broom",
    "bslib",
    "cachem",
    "car",
    "carData",
    "class",
    "cli",
    "colorspace",
    "cowplot",
    "cpp11",
    "Deriv",
    "digest",
    "doBy",
    "dplyr",
    "e1071",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "forecast",
    "Formula",
    "fracdiff",
    "fs",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "lattice",
    "lifecycle",
    "lme4",
    "lmtest",
    "magrittr",
    "MASS",
    "matlib",
    "Matrix",
    "MatrixModels",
    "memoise",
    "mgcv",
    "microbenchmark",
    "mime",
    "minqa",
    "misc3d",
    "modelr",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "pbkrtest",
    "pillar",
    "pkgconfig",
    "proxy",
    "purrr",
    "quantreg",
    "R6",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "rgl",
    "rlang",
    "rmarkdown",
    "rstudioapi",
    "S7",
    "sass",
    "scales",
    "SparseM",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "timeDate",
    "tinytex",
    "urca",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "yaml",
    "zoo"
  ],
  "_score": 3.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "hyperoverlap",
  "_universes": [
    "matildabrown"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-05-20T08:40:51.000Z",
      "distro": "noble",
      "commit": "4969bc1e594343ae26445274847e6048f099943e",
      "fileid": "c800d9f0bf4c6c56f5c9a372c487db7e7d6d5fdf44778a13ddf8d27d1f795260",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/matildabrown/actions/runs/26151065850"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-05-20T08:40:50.000Z",
      "distro": "noble",
      "commit": "4969bc1e594343ae26445274847e6048f099943e",
      "fileid": "d051c9dc0766ff77885670c82b8808197f670be807364ae24d80505430e8b05a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/matildabrown/actions/runs/26151065850"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-05-20T08:39:54.000Z",
      "commit": "4969bc1e594343ae26445274847e6048f099943e",
      "fileid": "20faf48749f097fe68099ae29191ff918ea46a6889c273e7988e137a5afba2dc",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/matildabrown/actions/runs/26151065850"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-05-20T08:39:57.000Z",
      "commit": "4969bc1e594343ae26445274847e6048f099943e",
      "fileid": "5fd07754459f0d20bf89895deb9c7562b9705acb14e979462e790a28b151f3b4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/matildabrown/actions/runs/26151065850"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-05-20T08:39:11.000Z",
      "commit": "4969bc1e594343ae26445274847e6048f099943e",
      "fileid": "982be67d56daf8906746e9aa7c817c2207f49146f5afd14335a09fc4b172bf73",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/matildabrown/actions/runs/26151065850"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-05-20T08:39:06.000Z",
      "commit": "4969bc1e594343ae26445274847e6048f099943e",
      "fileid": "584c07a29838f0221ab12104b1f7bb99d13bf71996df72f52d67df10e43683d0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/matildabrown/actions/runs/26151065850"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-05-20T08:39:23.000Z",
      "commit": "4969bc1e594343ae26445274847e6048f099943e",
      "fileid": "76591c29eb784706157ae9d9b1fa3a09c0d2e5e423deaa310794c2a561d2cf47",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/matildabrown/actions/runs/26151065850"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.2",
      "date": "2026-06-02T13:35:15.000Z",
      "commit": "4969bc1e594343ae26445274847e6048f099943e",
      "fileid": "adfed69fb23cdad390b86cac251a332066acde97d387ea55585cafb5270f9319",
      "status": "success",
      "buildurl": "https://github.com/r-universe/matildabrown/actions/runs/26151065850"
    }
  ]
}